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Documentation

  • Installation
  • Configuration Files
    • Examples
      • PHANGS Cycle 1
      • PHANGS Cycle 2
  • PJPipe Steps
    • PJPipeline
      • API
    • DownloadStep
      • API
    • GaiaQueryStep
      • API
    • MoveRawObsStep
      • API
    • Lv1Step
      • API
    • SingleTileDestripeStep
      • API
    • Lv2Step
      • API
    • GetWCSAdjustStep
      • API
    • ApplyWCSAdjustStep
      • API
    • LyotSeparateStep
      • API
    • LyotMaskStep
      • API
    • LevelMatchStep
      • API
    • MultiTileDestripeStep
      • API
    • PSFModelStep
      • API
    • Lv3Step
      • API
    • AstrometricCatalogStep
      • API
    • AstrometricAlignStep
      • API
    • MosaicIndividualFieldsStep
      • API
    • AnchoringStep
      • API
    • PSFMatchingStep
      • API
    • ReleaseStep
      • API
    • RegressAgainstPreviousStep
      • API
  • Changelog
    • 1.3.1 (Unreleased)
    • 1.3.0 (2025-10-02)
    • 1.2.0 (2024-09-03)
    • 1.1.0 (2024-03-04)
    • 1.0.4 (2024-01-04)
    • 1.0.2 (2023-12-01)
    • 1.0.0 (2023-12-01)
    • 0.10.1 (2023-11-20)
    • 0.10.0 (2023-11-14)
    • 0.9.2 (2023-09-18)
    • 0.9.1 (2023-09-04)
    • 0.9 (2023-07-25)
  • Reference/API
    • Pipeline
      • PJPipeline
        • PJPipeline.do_pipeline()
    • Anchoring
      • AnchoringStep
        • AnchoringStep.do_step()
        • AnchoringStep.parallel_anchoring()
        • AnchoringStep.run_step()
    • Apply WCS Adjust
      • ApplyWCSAdjustStep
        • ApplyWCSAdjustStep.do_step()
        • ApplyWCSAdjustStep.parallel_wcs_adjust()
        • ApplyWCSAdjustStep.run_step()
    • Astrometric Align
      • AstrometricAlignStep
        • AstrometricAlignStep.align_to_aligned_image()
        • AstrometricAlignStep.do_step()
        • AstrometricAlignStep.do_step_band()
        • AstrometricAlignStep.move_tweakback_files()
        • AstrometricAlignStep.tweakreg_align()
    • Astrometric Catalog
      • AstrometricCatalogStep
        • AstrometricCatalogStep.do_step()
        • AstrometricCatalogStep.generate_astro_cat()
    • Download
      • DownloadStep
        • DownloadStep.do_step()
        • DownloadStep.get_products()
        • DownloadStep.run_archive_query()
        • DownloadStep.run_download()
        • DownloadStep.verify_integrity()
    • Gaia Query
      • GaiaQueryStep
        • GaiaQueryStep.do_step()
        • GaiaQueryStep.make_catalog()
    • Get WCS Adjust
      • GetWCSAdjustStep
        • GetWCSAdjustStep.do_step()
        • GetWCSAdjustStep.get_visit_transforms()
        • GetWCSAdjustStep.make_stacked_images()
        • GetWCSAdjustStep.parallel_make_stacked_image()
        • GetWCSAdjustStep.run_cross_corr()
        • GetWCSAdjustStep.run_tweakreg()
    • Level Match
      • LevelMatchStep
        • LevelMatchStep.calculate_delta()
        • LevelMatchStep.do_step()
        • LevelMatchStep.find_optimum_deltas()
        • LevelMatchStep.get_level_match()
        • LevelMatchStep.get_per_dither_delta()
        • LevelMatchStep.get_plot_name()
        • LevelMatchStep.get_reproject()
        • LevelMatchStep.make_stacked_images()
        • LevelMatchStep.match_dithers()
        • LevelMatchStep.match_lyot_science()
        • LevelMatchStep.match_mosaic_tiles()
        • LevelMatchStep.match_nircam_short()
        • LevelMatchStep.parallel_delta_matrix()
        • LevelMatchStep.parallel_get_reproject()
        • LevelMatchStep.parallel_make_stacked_image()
        • LevelMatchStep.parallel_match_lyot_science()
        • LevelMatchStep.parallel_match_nircam_short()
        • LevelMatchStep.parallel_per_dither_delta()
    • Level 1
      • Lv1Step
        • Lv1Step.do_step()
        • Lv1Step.parallel_lv1()
        • Lv1Step.run_step()
    • Level 2
      • Lv2Step
        • Lv2Step.create_asn_files()
        • Lv2Step.do_step()
        • Lv2Step.get_asn_json()
        • Lv2Step.parallel_lv2()
        • Lv2Step.propagate_metadata()
        • Lv2Step.run_step()
    • Level 3
      • Lv3Step
        • Lv3Step.create_asn_file()
        • Lv3Step.do_step()
        • Lv3Step.propagate_metadata()
        • Lv3Step.run_step()
    • Lyot Masking
      • LyotMaskStep
        • LyotMaskStep.do_step()
        • LyotMaskStep.parallel_lyot_mask()
        • LyotMaskStep.parallel_lyot_mask_overlap()
        • LyotMaskStep.run_step()
    • Lyot Separation
      • LyotSeparateStep
        • LyotSeparateStep.do_step()
        • LyotSeparateStep.parallel_lyot_separate()
        • LyotSeparateStep.run_step()
    • Individual Field Mosaicking
      • MosaicIndividualFieldsStep
        • MosaicIndividualFieldsStep.do_step()
        • MosaicIndividualFieldsStep.parallel_mosaic_fields()
        • MosaicIndividualFieldsStep.run_step()
    • Move Raw Observations
      • MoveRawObsStep
        • MoveRawObsStep.do_step()
        • MoveRawObsStep.get_raw_files()
        • MoveRawObsStep.move_raw_files()
    • Multi-Tile Destriping
      • MultiTileDestripeStep
        • MultiTileDestripeStep.create_weighted_avg_image()
        • MultiTileDestripeStep.do_step()
        • MultiTileDestripeStep.get_data_avg_smooth()
        • MultiTileDestripeStep.get_mask()
        • MultiTileDestripeStep.multi_tile_destripe()
        • MultiTileDestripeStep.parallel_multi_tile_destripe()
        • MultiTileDestripeStep.run_multi_tile_destripe()
        • MultiTileDestripeStep.weighted_reproject_image()
    • PSF Matching
      • PSFMatchingStep
        • PSFMatchingStep.do_step()
        • PSFMatchingStep.parallel_psf_match()
        • PSFMatchingStep.run_step()
    • PSF Modelling
      • PSFModelStep
        • PSFModelStep.do_step()
        • PSFModelStep.get_initial_amp()
        • PSFModelStep.get_psf()
        • PSFModelStep.get_sat_coords()
        • PSFModelStep.make_diagnostic_plot()
        • PSFModelStep.run_step()
    • Regress Against Previous Version
      • RegressAgainstPreviousStep
        • RegressAgainstPreviousStep.do_step()
        • RegressAgainstPreviousStep.regress_plot()
    • Release
      • ReleaseStep
        • ReleaseStep.do_compress_diagnostic_plots()
        • ReleaseStep.do_move_backgrounds()
        • ReleaseStep.do_move_diagnostic_plots()
        • ReleaseStep.do_move_individual_fields()
        • ReleaseStep.do_move_psf_matched()
        • ReleaseStep.do_move_tweakback()
        • ReleaseStep.do_step()
        • ReleaseStep.move_files()
    • Single-Tile Destriping
      • SingleTileDestripeStep
        • SingleTileDestripeStep.do_step()
        • SingleTileDestripeStep.fit_robust_pca()
        • SingleTileDestripeStep.get_filter_diffuse()
        • SingleTileDestripeStep.make_destripe_plot()
        • SingleTileDestripeStep.make_mask_plot()
        • SingleTileDestripeStep.parallel_destripe()
        • SingleTileDestripeStep.reconstruct_pca()
        • SingleTileDestripeStep.run_median_filter()
        • SingleTileDestripeStep.run_pca_denoise()
        • SingleTileDestripeStep.run_remstriping()
        • SingleTileDestripeStep.run_row_median()
        • SingleTileDestripeStep.run_smooth()
        • SingleTileDestripeStep.run_step()
        • SingleTileDestripeStep.run_vertical_subtraction()
    • Utilities
      • attribute_setter()
      • do_jwst_convolution()
      • get_band_ext()
      • get_band_type()
      • get_default_args()
      • get_dq_bit_mask()
      • get_kws()
      • get_obs_table()
      • get_pixscale()
      • get_short_band_name()
      • level_data()
      • load_toml()
      • make_source_mask()
      • make_stacked_image()
      • parse_fits_to_table()
      • parse_parameter_dict()
      • recursive_setattr()
      • reproject_image()
      • save_file()
      • sigma_clip()
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